This does not happen often, but sometimes the driver caches do not get purged and the new SATA driver does not get loaded correctly from ROM.
Try this:
1) Delete and empty trash for the following file and two directories:
/System/Library/Extensions.mkext (a file)
/System/Library/Caches/com.apple.kernelcaches (a directory)
/System/Library/Caches/com.apple.romextensions (a directory)
Under Mac OS X 10.3 and 10.4, a volume greater than 2TB will show as a 2TB volume due to a limitation in Apple's ATA layer (just above the driver). Sonnet plans to provide a 10.4 fix in the next driver release. Under Mac OS X 10.5 and 10.6, the full capacity of the RAID volume is available.